PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511795.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 303aa    MW: 34487.2 Da    PI: 7.9619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.1e-12133180355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++  +f  L  l+P +     kK++Ka++L  A++Y+k+L+
  XP_004511795.1 133 QEHVMAERKRREKLTRSFIALSALVPGL-----KKMDKASVLGDAIKYVKQLK 180
                     6799************************.....9*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16133190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-12135184No hitNo description
SMARTSM003531.4E-14136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEDLTFFHQY PIDSLAYPFD NFHSLYESDS SNDNNYFNYD KTTPNCFPLE NLDLPRPTKK  60
IKTSNSCSYS SPQLISFEPL NAPQQFYNLD YSDLKPKIEK ITGLVSQGSY EEKILSNYDN  120
RANQTMRNST QAQEHVMAER KRREKLTRSF IALSALVPGL KKMDKASVLG DAIKYVKQLK  180
ERLQSLEEQG TKKKAIIVKR SFILPDDNND IESSKSNQTL PEIEVRVSAK DVLIKIQCDK  240
ENGLASTLLG HLQNHNLTLQ TTTFLPFGNN ILDITILAQM NKENCVTAKD LIGSLRKALL  300
VHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRE
2139144RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329631e-48CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE.
GenBankCR9550041e-48CR955004.2 Medicago truncatula chromosome 5 clone mte1-9e19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511795.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0729e-49BH025_ARATH; Transcription factor bHLH25
TrEMBLG7K1341e-124G7K134_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGGLYMA01G40600.21e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-46bHLH family protein